species:   Scscl
pid:       PID1702
parent:    Ssc-milR-178
paralog:   
locus:     NW_001820832.1:611592-611671
matures:   ['UGGUGUUGUCGGUUCCGCAAGU', 'UUGGUGGGAUCCUUGCCAAACCAUU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820832.1:611592-611671

2 out of bounds
16 alignments
6 proper strand
4 stranded perfect matches

                 *********************    **********************                
CCUGGGUAGAUGGUGUUGUCGGUUCCGCAAGUCUUAACGGCACAUCCGACUUGGUGGGAUCCUUGCCAAACCAUUUGGGU
(((....(((((((...((.(((((((((((((..............))))).))))))))...))...)))))))))).
----------UGGUGUUGUCGGUUCCGCAAGU------------------------------------------------ l=22 a=0 c
--------------------------------------------------UUGGUGGGAUCCUUGCCAAACCAUU----- l=25 a=0 c*
--------------------------------------------UCCGACUUGGUGGGAUCCUU---------------- l=20 a=1 ma
-------------------CGGUUCCGCAAGUCUUAAC------------------------------------------ l=19 a=0 ma*

--------------------------------------------UCCGACUUGGUGGGAUCCUU---------------- l=20 a=1 (ma)
------------------------------------------CAUCCGACUUGGUGGGAUCCUUGa-------------- l=24 a=1 
----------UGGUGUUGUCGGUUCCGCA--------------------------------------------------- l=19 a=1 
----------UGGUGUUGUCGGUUCCGCAA-------------------------------------------------- l=20 a=1 
----------UGGUGUUGUCGGUUCCGCAAG------------------------------------------------- l=21 a=1 
--UGGGUAGAUGGUGUUaUCGGU--------------------------------------------------------- l=21 a=1 

mb-01011
ax-1001011
ku-01
ss-110110001100
fn-101
